WSSD chrom chromosome with matching sequence to WSSD chromStart start coordinate on chromosome chromEnd end coordinate on chroomosme name accession underlying the sequence from which the WSSD piece was extracted fullName WSSD Full Name including celera accession and begin and end positions within the combined bac assembly fracMatch the fraction of matching nucleotides between assembly sequence and the WSSD piece bpAlign total number of aligned base pairs betweeen assembly and WSSD piece WGAC *each pairwise is represented twice in order to display each sequence in the browser* chrom displayed chromosome coordinate chromStart displayed start coordinate chromEnd displayed end coordiante name a unique identifier used for internal database management score the fraction similarity multiplied by 1000 strand orientation of displayed relative to other otherChrom other position chromosome otherStart other position start coordinate otherEnd other position end coordiante otherSize length of other chromosome uid unique identifier linking the 2 entries for each pairwise alignment posBasesHit number of bases in alignment with testResult GoodHit 0=inadequate WSSD support, 1=adequate WSSD support BadCov 0= adequate WSSD coverage 1=inadequate WSSD coverage verdict Good_low =assumed duplication (alignment < 98% similar) Good = enough celera coverage (alignment >98% identity) Bad = lacking enough celera coverage (alignment >98% identity) chits number of bases hit by WSSD similarities for displayed sequence:other sequence ccov number of bases covered by WSSD clones for displayed sequence:other sequence alignfile name of alignment file alignL length of alignment (total number of characters within indels) indelN number of indels indelS number of characters for all indels alignB number of bases that aligned across from another base matchB number of aligned bases that match (same base) mismatchB number of aligned bases that do not match transitionsB number of transitions within mismatches transversionsB number of transversions within mismatches fracMatch fraction of aligned bases that match fracMatchIndel aligned bases that match divided by (total aligned bases + number of indels) jcK Jukes-Cantor Genetic Distance k2K Kimura's 2 parameter Genetic Distance non redundant WGAC chrom chromosome chromStart start position on chromosme chromEnd end position on chromosome