	Total Aligns	Median	Mean	Min	Max	Total aligned bases	>=5kb		>=10kb		>=20kb
	Total Aligns		(bp)	(bp)	(bp)	Total aligned bases	bp	%	bp	%	bp	%
Both	25239	3561	10485	1001	785807	264631918	2.32E+08	87.6662	2.05E+08	77.56	1.57E+08	59.39674
Inter	14860	2689	8582	1001	756984	1.28E+08	1.07E+08	84.24762	94295653	73.93	71918538	56.38852
Intra	10379	5231	13208	1001	785807	1.37E+08	1.25E+08	90.84664	1.11E+08	80.93	85264192	62.19541

Bases involved in segmental duplication and pairwise alignment
	Non-redundant duplication (Mb) *			Number of pairwise aliignment			Average length of pairwise alignment (bp)			Total aligined base pairs (Mb)			Average percent identity of pairwise alignment (%)
	Inter	Intra	Both	Inter	Intra	Both	Inter	Intra	Both	Inter	Intra	Both	Inter	Intra	Both
Genome	68.54 (2.39%)	111.77 (3.90%)	152 (5.31%)	14860	10379	25239	8583	13208	10485	127.54	137.09	264.63	95.1	96.61	95.88

file

#aligns

Joins

25238

Pieces

28852

GenomeSize (non gap)

2865069170