| Count | Average length (bp) | Average identity | Max length (bp) | Min length (bp) | Sum of bases (bp) | Media length (bp) | |||||||||||||||
| Kb | inter | intra | both | inter | intra | both | inter | intra | both | inter | intra | both | inter | intra | both | inter | intra | both | inter | intra | both |
| 1 | 6,167 | 2,230 | 8,397 | 1,354 | 1,391 | 1,364 | 92.91% | 93.60% | 93.11% | 1,999 | 1,999 | 1,999 | 1,000 | 1,000 | 1,000 | 8,351,525 | 3,101,017 | 11,452,542 | |||
| 2 | 1,749 | 1,081 | 2,830 | 2,429 | 2,473 | 2,446 | 93.74% | 94.30% | 93.95% | 2,996 | 2,999 | 2,999 | 2,001 | 2,000 | 2,000 | 4,248,360 | 2,673,662 | 6,922,022 | |||
| 3 | 1,168 | 1,146 | 2,314 | 3,440 | 3,474 | 3,457 | 93.34% | 93.67% | 93.49% | 3,999 | 3,998 | 3,999 | 3,000 | 3,000 | 3,000 | 4,018,084 | 3,981,272 | 7,999,356 | |||
| 4 | 749 | 676 | 1,425 | 4,494 | 4,482 | 4,488 | 93.61% | 94.56% | 94.07% | 4,997 | 4,998 | 4,998 | 4,001 | 4,005 | 4,001 | 3,366,128 | 3,029,823 | 6,395,951 | |||
| 5 | 563 | 601 | 1,164 | 5,515 | 5,465 | 5,489 | 93.64% | 94.05% | 93.86% | 5,995 | 5,997 | 5,997 | 5,001 | 5,000 | 5,000 | 3,104,803 | 3,284,190 | 6,388,993 | |||
| 6 | 350 | 424 | 774 | 6,468 | 6,463 | 6,465 | 93.69% | 94.46% | 94.11% | 6,999 | 6,996 | 6,999 | 6,004 | 6,001 | 6,001 | 2,263,643 | 2,740,511 | 5,004,154 | |||
| 7 | 394 | 373 | 767 | 7,437 | 7,488 | 7,462 | 93.56% | 94.10% | 93.82% | 7,998 | 7,992 | 7,998 | 7,008 | 7,002 | 7,002 | 2,930,294 | 2,793,110 | 5,723,404 | |||
| 8 | 267 | 222 | 489 | 8,477 | 8,525 | 8,499 | 93.91% | 94.65% | 94.25% | 8,987 | 8,997 | 8,997 | 8,015 | 8,006 | 8,006 | 2,263,266 | 1,892,528 | 4,155,794 | |||
| 9 | 239 | 257 | 496 | 9,526 | 9,479 | 9,502 | 94.17% | 94.19% | 94.18% | 9,979 | 9,997 | 9,997 | 9,007 | 9,000 | 9,000 | 2,276,764 | 2,436,044 | 4,712,808 | |||
| 10 | 1,590 | 1,737 | 3,327 | 14,188 | 14,292 | 14,242 | 94.31% | 95.14% | 94.75% | 19,997 | 19,996 | 19,997 | 10,034 | 10,004 | 10,004 | 22,559,577 | 24,824,465 | 47,384,042 | |||
| 20 | 709 | 681 | 1,390 | 24,516 | 24,090 | 24,308 | 95.12% | 96.09% | 95.58% | 29,994 | 29,972 | 29,994 | 20,006 | 20,005 | 20,005 | 17,382,028 | 16,405,404 | 33,787,432 | |||
| 30 | 374 | 273 | 647 | 34,303 | 34,351 | 34,323 | 95.71% | 97.03% | 96.27% | 39,992 | 39,981 | 39,992 | 30,041 | 30,007 | 30,007 | 12,829,355 | 9,377,718 | 22,207,073 | |||
| 40 | 179 | 172 | 351 | 44,461 | 44,770 | 44,612 | 96.19% | 97.24% | 96.71% | 49,884 | 49,990 | 49,990 | 40,014 | 40,156 | 40,014 | 7,958,490 | 7,700,431 | 15,658,921 | |||
| 50 | 376 | 571 | 947 | 91,670 | 102,341 | 98,104 | 96.56% | 98.70% | 97.90% | 756,988 | 765,473 | 765,473 | 50,060 | 50,044 | 50,044 | 34,468,075 | 58,436,583 | 92,904,658 | |||
| total | 14,874 | 10,444 | 25,318 | 8,607 | 13,661 | 10,692 | 95.07% | 96.76% | 95.96% | 756,988 | 765,473 | 765,473 | 1,000 | 1,000 | 1,000 | 128,020,392 | 142,676,758 | 270,697,150 | 2,651 | 5,162 | 3,538 |
| Total non redundant dup space (bp) | |||||||||||||||||||||
| inter | 67,858,436 | ||||||||||||||||||||
| intra | 113,662,560 | ||||||||||||||||||||
| both | 154,005,734 | ||||||||||||||||||||
| Number of alignment | |||||||||||||||||||||
| w/ welding (joins) | 25,318 | ||||||||||||||||||||
| w/o welding (pieces) | 28,859 | ||||||||||||||||||||
| Genome (build35) length | Genome (build35) length without gap | ||||||||||||||||||||
| chr | bp | mb | chr | bp | |||||||||||||||||
| chr1 | 245,522,847 | 245.52 | chr1 | 222,827,847 | |||||||||||||||||
| chr1_random | 3,897,131 | 3.8971 | chr1_random | 3,223,231 | |||||||||||||||||
| chr2 | 243,018,229 | 243.02 | chr2 | 237,503,374 | |||||||||||||||||
| chr2_random | 418,158 | 0.4182 | chr2_random | 367,858 | |||||||||||||||||
| chr3 | 199,505,740 | 199.51 | chr3 | 194,635,738 | |||||||||||||||||
| chr3_random | 970,716 | 0.9707 | chr3_random | 770,716 | |||||||||||||||||
| chr4 | 191,411,218 | 191.41 | chr4 | 187,161,218 | |||||||||||||||||
| chr4_random | 1,030,282 | 1.0303 | chr4_random | 780,282 | |||||||||||||||||
| chr5 | 180,857,866 | 180.86 | chr5 | 177,702,766 | |||||||||||||||||
| chr5_random | 143,687 | 0.1437 | chr5_random | 143,687 | |||||||||||||||||
| chr6 | 170,975,699 | 170.98 | chr6 | 167,317,698 | |||||||||||||||||
| chr6_random | 1,875,562 | 1.8756 | chr6_random | 1,822,740 | |||||||||||||||||
| chr7 | 158,628,139 | 158.63 | chr7 | 154,759,139 | |||||||||||||||||
| chr7_random | 778,964 | 0.779 | chr7_random | 627,007 | |||||||||||||||||
| chr8 | 146,274,826 | 146.27 | chr8 | 142,612,826 | |||||||||||||||||
| chr8_random | 943,810 | 0.9438 | chr8_random | 587,123 | |||||||||||||||||
| chr9 | 138,429,268 | 138.43 | chr9 | 117,781,268 | |||||||||||||||||
| chr9_random | 1,312,665 | 1.3127 | chr9_random | 956,287 | |||||||||||||||||
| chr10 | 135,413,628 | 135.41 | chr10 | 131,613,619 | |||||||||||||||||
| chr10_rando | 113,275 | 0.1133 | chr10_random | 111,043 | |||||||||||||||||
| chr11 | 134,452,384 | 134.45 | chr11 | 131,130,753 | |||||||||||||||||
| chr12 | 132,449,811 | 132.45 | chr12 | 130,259,309 | |||||||||||||||||
| chr12_rando | 466,818 | 0.4668 | chr12_random | 463,859 | |||||||||||||||||
| chr13 | 114,142,980 | 114.14 | chr13 | 95,559,980 | |||||||||||||||||
| chr13_rando | 186,858 | 0.1869 | chr13_random | 186,858 | |||||||||||||||||
| chr14 | 106,368,585 | 106.37 | chr14 | 88,290,585 | |||||||||||||||||
| chr15 | 100,338,915 | 100.34 | chr15 | 81,341,915 | |||||||||||||||||
| chr15_rando | 784,346 | 0.7843 | chr15_random | 578,182 | |||||||||||||||||
| chr16 | 88,827,254 | 88.827 | chr16 | 78,884,752 | |||||||||||||||||
| chr16_rando | 105,485 | 0.1055 | chr16_random | 105,435 | |||||||||||||||||
| chr17 | 78,774,742 | 78.775 | chr17 | 77,800,220 | |||||||||||||||||
| chr17_rando | 2,618,010 | 2.618 | chr17_random | 1,800,157 | |||||||||||||||||
| chr18 | 76,117,153 | 76.117 | chr18 | 74,656,155 | |||||||||||||||||
| chr18_rando | 4,262 | 0.0043 | chr18_random | 4,262 | |||||||||||||||||
| chr19 | 63,811,651 | 63.812 | chr19 | 55,785,651 | |||||||||||||||||
| chr19_rando | 301,858 | 0.3019 | chr19_random | 251,858 | |||||||||||||||||
| chr20 | 62,435,964 | 62.436 | chr20 | 59,505,253 | |||||||||||||||||
| chr21 | 46,944,323 | 46.944 | chr21 | 34,170,106 | |||||||||||||||||
| chr22 | 49,554,710 | 49.555 | chr22 | 34,764,789 | |||||||||||||||||
| chr22_rando | 257,318 | 0.2573 | chr22_random | 207,318 | |||||||||||||||||
| chrX | 154,824,264 | 154.82 | chrX | 150,394,264 | |||||||||||||||||
| chrX_random | 1,719,168 | 1.7192 | chrX_random | 1,479,773 | |||||||||||||||||
| chrY | 57,701,691 | 57.702 | chrY | 24,871,691 | |||||||||||||||||
| Total | 3,094,710,260 | 3094.7 | TOTAL | 2,865,798,592 | |||||||||||||||||
Whole data set of the segmental duplication analysis of build35