Count Average length (bp) Average identity  Max length (bp) Min length (bp) Sum of bases (bp) Media length (bp)
Kb inter intra both inter intra both inter intra both inter intra both inter intra both inter intra both inter intra both
1 6,167 2,230 8,397 1,354 1,391 1,364 92.91% 93.60% 93.11% 1,999 1,999 1,999 1,000 1,000 1,000 8,351,525 3,101,017 11,452,542    
2 1,749 1,081 2,830 2,429 2,473 2,446 93.74% 94.30% 93.95% 2,996 2,999 2,999 2,001 2,000 2,000 4,248,360 2,673,662 6,922,022    
3 1,168 1,146 2,314 3,440 3,474 3,457 93.34% 93.67% 93.49% 3,999 3,998 3,999 3,000 3,000 3,000 4,018,084 3,981,272 7,999,356    
4 749 676 1,425 4,494 4,482 4,488 93.61% 94.56% 94.07% 4,997 4,998 4,998 4,001 4,005 4,001 3,366,128 3,029,823 6,395,951    
5 563 601 1,164 5,515 5,465 5,489 93.64% 94.05% 93.86% 5,995 5,997 5,997 5,001 5,000 5,000 3,104,803 3,284,190 6,388,993    
6 350 424 774 6,468 6,463 6,465 93.69% 94.46% 94.11% 6,999 6,996 6,999 6,004 6,001 6,001 2,263,643 2,740,511 5,004,154    
7 394 373 767 7,437 7,488 7,462 93.56% 94.10% 93.82% 7,998 7,992 7,998 7,008 7,002 7,002 2,930,294 2,793,110 5,723,404    
8 267 222 489 8,477 8,525 8,499 93.91% 94.65% 94.25% 8,987 8,997 8,997 8,015 8,006 8,006 2,263,266 1,892,528 4,155,794    
9 239 257 496 9,526 9,479 9,502 94.17% 94.19% 94.18% 9,979 9,997 9,997 9,007 9,000 9,000 2,276,764 2,436,044 4,712,808    
10 1,590 1,737 3,327 14,188 14,292 14,242 94.31% 95.14% 94.75% 19,997 19,996 19,997 10,034 10,004 10,004 22,559,577 24,824,465 47,384,042    
20 709 681 1,390 24,516 24,090 24,308 95.12% 96.09% 95.58% 29,994 29,972 29,994 20,006 20,005 20,005 17,382,028 16,405,404 33,787,432    
30 374 273 647 34,303 34,351 34,323 95.71% 97.03% 96.27% 39,992 39,981 39,992 30,041 30,007 30,007 12,829,355 9,377,718 22,207,073    
40 179 172 351 44,461 44,770 44,612 96.19% 97.24% 96.71% 49,884 49,990 49,990 40,014 40,156 40,014 7,958,490 7,700,431 15,658,921    
50 376 571 947 91,670 102,341 98,104 96.56% 98.70% 97.90% 756,988 765,473 765,473 50,060 50,044 50,044 34,468,075 58,436,583 92,904,658    
total 14,874 10,444 25,318 8,607 13,661 10,692 95.07% 96.76% 95.96% 756,988 765,473 765,473 1,000 1,000 1,000 128,020,392 142,676,758 270,697,150 2,651 5,162 3,538
Total non redundant dup space (bp)
inter 67,858,436
intra 113,662,560
both 154,005,734
Number of alignment
w/ welding (joins) 25,318
w/o welding (pieces) 28,859
Genome (build35) length       Genome (build35) length without gap
chr   bp mb     chr   bp
chr1 245,522,847 245.52 chr1 222,827,847
chr1_random 3,897,131 3.8971 chr1_random 3,223,231
chr2 243,018,229 243.02 chr2 237,503,374
chr2_random 418,158 0.4182 chr2_random 367,858
chr3 199,505,740 199.51 chr3 194,635,738
chr3_random 970,716 0.9707 chr3_random 770,716
chr4 191,411,218 191.41 chr4 187,161,218
chr4_random 1,030,282 1.0303 chr4_random 780,282
chr5 180,857,866 180.86 chr5 177,702,766
chr5_random 143,687 0.1437 chr5_random 143,687
chr6 170,975,699 170.98 chr6 167,317,698
chr6_random 1,875,562 1.8756 chr6_random 1,822,740
chr7 158,628,139 158.63 chr7 154,759,139
chr7_random 778,964 0.779 chr7_random 627,007
chr8 146,274,826 146.27 chr8 142,612,826
chr8_random 943,810 0.9438 chr8_random 587,123
chr9 138,429,268 138.43 chr9 117,781,268
chr9_random 1,312,665 1.3127 chr9_random 956,287
chr10 135,413,628 135.41 chr10 131,613,619
chr10_random 113,275 0.1133 chr10_random 111,043
chr11 134,452,384 134.45 chr11 131,130,753
chr12 132,449,811 132.45 chr12 130,259,309
chr12_random 466,818 0.4668 chr12_random 463,859
chr13 114,142,980 114.14 chr13 95,559,980
chr13_random 186,858 0.1869 chr13_random 186,858
chr14 106,368,585 106.37 chr14 88,290,585
chr15 100,338,915 100.34 chr15 81,341,915
chr15_random 784,346 0.7843 chr15_random 578,182
chr16 88,827,254 88.827 chr16 78,884,752
chr16_random 105,485 0.1055 chr16_random 105,435
chr17 78,774,742 78.775 chr17 77,800,220
chr17_random 2,618,010 2.618 chr17_random 1,800,157
chr18 76,117,153 76.117 chr18 74,656,155
chr18_random 4,262 0.0043 chr18_random 4,262
chr19 63,811,651 63.812 chr19 55,785,651
chr19_random 301,858 0.3019 chr19_random 251,858
chr20 62,435,964 62.436 chr20 59,505,253
chr21 46,944,323 46.944 chr21 34,170,106
chr22 49,554,710 49.555 chr22 34,764,789
chr22_random 257,318 0.2573 chr22_random 207,318
chrX 154,824,264 154.82 chrX 150,394,264
chrX_random 1,719,168 1.7192 chrX_random 1,479,773
chrY 57,701,691 57.702 chrY 24,871,691
Total   3,094,710,260 3094.7     TOTAL   2,865,798,592

Whole data set of the segmental duplication analysis of build35