inter pairs is 22980
intra pairs is 8763
  Count     Average Length   Average Identity   Sum of Bases
size inter intra both inter intra both inter intra both inter intra both
1.kb 9155 1519 10674 1409 1447 1428 92.93% 92.99% 92.96% 25805794 4395268 30201062
2.kb 3674 794 4468 2458 2466 2462 93.34% 93.54% 93.44% 18062195 3915340 21977535
3.kb 2187 863 3049 3444 3510 3477 93.19% 93.18% 93.19% 15061095 6055047 21116142
4.kb 1207 582 1788 4466 4444 4455 93.41% 93.83% 93.62% 10777204 5168081 15945285
5.kb 668 520 1188 5522 5460 5491 93.59% 93.82% 93.71% 7377724 5672665 13050389
6.kb 441 320 761 6430 6471 6451 93.65% 93.76% 93.71% 5671511 4141531 9813042
7.kb 442 306 748 7428 7540 7484 93.56% 93.88% 93.72% 6565967 4614475 11180442
8.kb 326 208 534 8469 8470 8470 93.80% 93.74% 93.77% 5521709 3515228 9036937
9.kb 299 230 529 9526 9485 9506 93.93% 94.08% 94.00% 5686993 4363281 10050274
10.kb 2029 1642 3670 14325 14509 14417 94.32% 94.66% 94.49% 58117818 47633650 105751468
20.kb 1059 687 1745 24307 24151 24229 95.11% 95.94% 95.52% 51458377 33159551 84617928
30.kb 567 296 862 34507 34299 34403 95.47% 96.64% 96.05% 39096580 20270916 59367496
40.kb 302 177 478 44310 44840 44575 95.77% 97.36% 96.56% 26718756 15828688 42547444
50.kb 624 623 1247 95900 104118 100009 96.06% 98.28% 97.17% 119683239 129730462 249413701
Total non redundant dup space (bp)
inter 84116412
intra 106218352
both 158305923
Number of alignment
Welding (joins) 31742
w/o welding (pieces) 35215
chr Genome Length with Gap Genome Length without Gap
     
chr1 249250621 225280621
chr10 135534747 131314738
chr11 135006516 131129516
chr11_gl000202_random 40103 40103
chr12 133851895 130481393
chr13 115169878 95589878
chr14 107349540 88289540
chr15 102531392 81694766
chr16 90354753 78884753
chr17 81195210 77795210
chr17_ctg5_hap1 1680828 1580828
chr17_gl000203_random 37498 37498
chr17_gl000204_random 81310 81310
chr17_gl000205_random 174588 174588
chr17_gl000206_random 41001 41001
chr18 78077248 74657229
chr18_gl000207_random 4262 4262
chr19 59128983 55808983
chr19_gl000208_random 92689 92689
chr19_gl000209_random 159169 159169
chr1_gl000191_random 106433 106433
chr1_gl000192_random 547496 547496
chr2 243199373 238204518
chr20 63025520 59505520
chr21 48129895 35106642
chr21_gl000210_random 27682 27582
chr22 51304566 34894545
chr3 198022430 194797135
chr4 191154276 187661676
chr4_ctg9_hap1 590426 590426
chr4_gl000193_random 189789 189789
chr4_gl000194_random 191469 191469
chr5 180915260 177695260
chr6 171115067 167395066
chr6_apd_hap1 4622290 2320747
chr6_cox_hap2 4795371 4795371
chr6_dbb_hap3 4610396 4204302
chr6_mann_hap4 4683263 4100741
chr6_mcf_hap5 4833398 3794911
chr6_qbl_hap6 4611984 4295325
chr6_ssto_hap7 4928567 4173551
chr7 159138663 155353663
chr7_gl000195_random 182896 182896
chr8 146364022 142888922
chr8_gl000196_random 38914 38914
chr8_gl000197_random 37175 37075
chr9 141213431 120143431
chr9_gl000198_random 90085 90085
chr9_gl000199_random 169874 169874
chr9_gl000200_random 187035 187035
chr9_gl000201_random 36148 36148
chrM 16571 16571
chrUn_gl000211 166566 166566
chrUn_gl000212 186858 186858
chrUn_gl000213 164239 164239
chrUn_gl000214 137718 137718
chrUn_gl000215 172545 172545
chrUn_gl000216 172294 172294
chrUn_gl000217 172149 172149
chrUn_gl000218 161147 161147
chrUn_gl000219 179198 179198
chrUn_gl000220 161802 161802
chrUn_gl000221 155397 155397
chrUn_gl000222 186861 186861
chrUn_gl000223 180455 180455
chrUn_gl000224 179693 179693
chrUn_gl000225 211173 211173
chrUn_gl000226 15008 15008
chrUn_gl000227 128374 128374
chrUn_gl000228 129120 129120
chrUn_gl000229 19913 19913
chrUn_gl000230 43691 43691
chrUn_gl000231 27386 27386
chrUn_gl000232 40652 40652
chrUn_gl000233 45941 45941
chrUn_gl000234 40531 40531
chrUn_gl000235 34474 34474
chrUn_gl000236 41934 41934
chrUn_gl000237 45867 45867
chrUn_gl000238 39939 39939
chrUn_gl000239 33824 33824
chrUn_gl000240 41933 41933
chrUn_gl000241 42152 42152
chrUn_gl000242 43523 43523
chrUn_gl000243 43341 43341
chrUn_gl000244 39929 39929
chrUn_gl000245 36651 36651
chrUn_gl000246 38154 38154
chrUn_gl000247 36422 36422
chrUn_gl000248 39786 39786
chrUn_gl000249 38502 38502
chrX 155270560 151100560
chrY 59373566 25653566
TOTAL 3137161264 2897310462