This page contains updated data regarding recent segmental duplications in Cow genome assembly version 4.0 .   It focuses on genomic duplications >1000bp and >90% identity.

Data Access

UCSC Genome Browser

This allows browsing of the genome.

Parasight Views showing Inter & Intra Duplication

Inter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.  

Statistics

Analysis on various KB-Group Breakdowns 

WGAC Length Distribution

Analysis on distribution of number of pairs at different length categories. 

WGAC Similarity distributions

Analysis on distribution of number of pairs at different Percent Similarity. 

Non-redundant Duplication Ratios

Histograph shows the non redundant Seq Dup distribution on each chromosomes. 

Histograph show the Seg Dup ratio on each chromosome 

Identity vs Length

Will come , it is only a sample now. Length vs Identity scatter plot. 

Kimura vs Length

Will Come. It is only a sample now. Kimura vs Identity scatter plot. 

data

contains data not categorized