inter pairs is 4186
intra pairs is 2600
		count			Average Length			average identity			total length
size	inter	intra	both	inter	intra	both	inter	intra	both	inter	intra	both
1.kb	2311	1733	4044	1380.19	1336.33	1358.26	95.51%	95.99%	95.75%	6377868	4631712	11009580
2.kb	801	388	1188	2455.35	2453.86	2454.61	95.46%	96.05%	95.76%	3931016	1901743	5832759
3.kb	394	149	543	3452.25	3445.05	3448.65	96.00%	96.93%	96.47%	2720374	1023181	3743555
4.kb	253	94	347	4470.03	4486.13	4478.08	96.52%	97.63%	97.08%	2261835	838906	3100741
5.kb	110	65	175	5496.56	5432.29	5464.42	95.76%	98.08%	96.92%	1203746	706198	1909944
6.kb	120	52	171	6493.51	6444.21	6468.86	96.06%	97.78%	96.92%	1551948	663754	2215702
7.kb	131	40	171	7449.86	7503.53	7476.70	96.87%	98.17%	97.52%	1951863	592779	2544642
8.kb	29	14	43	8560.19	8311.21	8435.70	95.22%	96.80%	96.01%	487931	232714	720645
9.kb	9	21	30	9443.35	9456.90	9450.13	96.55%	98.33%	97.44%	160537	397190	557727
10.kb	29	40	69	13681.14	13187.96	13434.55	95.67%	97.45%	96.56%	793506	1041849	1835355
20.kb	1	5	6	24052.00	21625.20	22838.60	100.00%	97.05%	98.53%	48104	216252	264356
30.kb	0	2	2	0.00	31151.50	31151.50	0.00%	100.00%	100.00%	0	124606	124606
40.kb	0	0	0	0.00	0.00	0.00	0.00%	0.00%	0.00%	0	0	0
50.kb	1	0	1	57191.50	0.00	57191.50	100.00%	0.00%	100.00%	114383	0	114383
Total None redundant dup space (bp)
inter		3,399,461
intra		5,384,716
both		6,873,777
Number of Alignments
Weilding (joins)		6787
w/o Weilding (Pieces)		7110
chrom	Genome Length with gaps	Genome Length without Gap
chr2L	23011544	23011344
chr2LHet	368872	297872
chr2R	21146708	21146608
chr2RHet	3288761	2721941
chr3L	24543557	24543457
chr3LHet	2555491	2416308
chr3R	27905053	27905053
chr3RHet	2517507	2264306
chr4	1351857	1351757
chrM	19517	19517
chrU	10049037	8368248
chrUextra	29004656	25541756
chrX	22422827	22332727
chrXHet	204112	204112
chrYHet	347038	242806
total	168736537	162367812