This page contains updated data regarding recent segmental duplications in Elephant genome assembly (download from ftp://ftp.ncbi.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Loxodonta_africana/Loxafr3.0/). It focuses on genomic duplications >1000bp and >90% identity.UCSC Genome Browser
This allows browsing of the genome.
Parasight view is not available, because all scaffolds are not assigned to chromosome.
Inter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.Statistics
Analysis on various KB-Group BreakdownsWGAC Length Distribution
Analysis on distribution of number of pairs at different length categories.WGAC Similarity distributions
Analysis on distribution of number of pairs at different Percent Similarity.Non-redundant
Because the elephant assembly is not mapped to chromosome yet. There is no histograph to show te NR space on chromosome. Here is a table for NR DUP space on each scaffolds and contigs.Identity vs Length
Length vs Identity scatter plot.Kimura vs Length
Kimura vs Length scatter plot.data
contains WGAC data