This page contains updated data regarding recent segmental duplications in the finishing mouse genome (Feb. 2006 (mm8)).   It focuses on genomic duplications >1 kb and >90% identity. Unless otherwise specified, all figures and statistics are based on filtered data, in which pairwise alignments with identity > 94% and either of the pairwise loci not overlapping with WSSD (stringent div/ide >= 0.8) were removed.

Additional Data Access

UCSC Browser

This will allow you to browse the Mouse genome.

Statistics of Duplications

Based on whole genome assembly comparison (WGAC) (Joins analysis: after the generation of final global alignments, larger gaps (up to 20 kb insertion side; minimum sideof gap ±20 bp.) between two duplications were merged. Seeref. 4). 

Histogram

Inter and intrachromosomal duplication aligned bases distributed in different identities, alignment length and chromosomes.

Distribution of non-redundant duplication.

Global view (parasight with length cut 10kb and 5kb) (red and blue for inter and intrachromosomal respectively)  

Not filtered

Filtered (by WSSD)

Segmental duplication coordinates

file histogram_exel_files