inter pairs is 81424
intra pairs is 116755
  Count Average length Average Identity Total length
size inter intra both inter intra both inter intra both inter intra both
1.kb 32470 66108 98578 1468 1458 1463 95.17% 96.00% 95.59% 95341422 192833154 288174576
2.kb 24005 30678 54684 2409 2392 2400 96.53% 96.34% 96.44% 115648592 146742297 262390889
3.kb 10171 9845 20016 3447 3424 3435 96.79% 96.53% 96.66% 70121601 67412955 137534556
4.kb 5806 4509 10316 4459 4433 4446 96.83% 96.67% 96.75% 51787645 39979053 91766698
5.kb 3358 2361 5719 5456 5451 5454 97.04% 96.80% 96.92% 36644469 25740562 62385031
6.kb 2123 1265 3388 6470 6447 6459 97.34% 96.81% 97.08% 27479712 16304450 43784162
7.kb 1257 701 1958 7460 7460 7460 97.57% 97.18% 97.37% 18748179 10459398 29207577
8.kb 798 412 1210 8464 8438 8451 97.78% 97.39% 97.58% 13499865 6952623 20452488
9.kb 485 243 727 9458 9461 9459 97.97% 97.68% 97.82% 9165153 4588392 13753545
10.kb 938 602 1540 12070 12544 12307 97.82% 97.65% 97.73% 22631638 15102525 37734163
20.kb 6 17 23 21167 23413 22290 97.80% 97.80% 97.80% 232833 796050 1028883
30.kb 0 1 1 0 31284 31284 0.00% 98.53% 98.53% 0 31284 31284
40.kb 0 0 0 0 0 0 0.00% 0.00% 0.00% 0 0 0
50.kb 0 2 2 0 55176 55176 0.00% 97.92% 97.92% 0 220703 220703
total 81415 116742 198180 461301109 527163446 988464555
Total None redundant dup space (bp)
inter 281566913
intra 126444329
both 384501909
Number of Alignment
Weilding (joins) 198180
w/o Weilding (Pieces) 202058
Chromosome Genome Length Genome Length without Gap
chr1 118548696 117962396
chr10 20806668 20668268
chr10_random 559132 542832
chr11 21403021 21274721
chr11_random 295904 289504
chr12 21576510 21439410
chr12_random 345412 337812
chr13 16962381 16828981
chr13_random 2653678 2606878
chr14 16419078 16297478
chr14_random 252098 245298
chr15 14428146 14286746
chr15_random 359589 347889
chr16 9909 9509
chr16_random 187953 182053
chr17 11648728 11529228
chr17_random 210589 204389
chr18 11201131 11079731
chr18_random 474824 465724
chr19 11587733 11476933
chr19_random 200344 194944
chr1A 73657157 73320157
chr1A_random 689636 669836
chr1B 1083483 1064283
chr1B_random 142794 139394
chr1_random 1193292 1160292
chr2 156412533 155678333
chr20 15652063 15496863
chr20_random 300503 291503
chr21 5979137 5913537
chr21_random 1862743 1828943
chr22 3370227 3319027
chr22_random 803674 781974
chr23 6196912 6098312
chr23_random 548500 532500
chr24 8021379 7905579
chr24_random 186162 180162
chr25 1275379 1247679
chr25_random 472805 459205
chr26 4907541 4829341
chr26_random 1627540 1586440
chr27 4618897 4535397
chr27_random 208747 203047
chr28 4963201 4876701
chr28_random 199714 192214
chr2_random 1793874 1753274
chr3 112617285 112226385
chr3_random 1378982 1345282
chr4 69780378 69451878
chr4A 20704505 20547105
chr4A_random 258280 251780
chr4_random 5148506 5079606
chr5 62374962 62026862
chr5_random 2517995 2490295
chr6 36305782 36074382
chr6_random 2096744 2070144
chr7 39844632 39617032
chr7_random 603983 589983
chr8 27993427 27836727
chr8_random 5113623 5062423
chr9 27241186 27058286
chr9_random 369730 359530
chrLG2 109741 106141
chrLG5 16416 15716
chrLGE22 883365 866065
chrLGE22_random 454016 439116
chrM 16853 16853
chrUn 175225315 172051665
chrZ 72861351 72005451
chrZ_random 2969867 2941267
TOTAL 1233186341 1222864691