This page contains updated data regarding recent segmental duplications in Zebra Finch (The Jul. 2008 Taeniopygia guttata draft assembly). It focuses on genomic duplications >1000bp and >90% identity.
Data Access
UCSC Genome BrowserThis allows browsing of the genome.
Parasight Views showing Inter & Intra DuplicationInter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.
StatisticsAnalysis on various KB-Group Breakdowns
WGAC Length DistributionAnalysis on distribution of number of pairs at different length categories.
WGAC Similarity distributionsAnalysis on distribution of number od pairs at different Percent Similarity.
Non-redundant Duplication RatiosHistograph shows the non redundant Seq Dup distribution on each chromosomes.
Histograph show the Seg Dup ratio on each chromosome
Identity vs LengthLength vs Identity scatter plot.
Kimura vs LengthKimura vs Length scatter plot.
WGAC datacontains WGAC data
WSSD datacontains WSSD data